Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs35909001 chr10:94782546 GT/G 4.66E-5 480 30.08 33.13 44.3 KM Plot
PRAD rs35916511 chr8:143370175 A/G 7.09E-5 481 30.93 31.43 28.13 KM Plot
PRAD rs35926000 chr20:2061208 A/G 3.36E-7 492 28.8 33.47 29.55 KM Plot
PRAD rs35939580 chr17:62973078 G/A 1.03E-8 485 30.93 31.37 19.63 KM Plot
PRAD rs35968539 chr1:31822366 TG/T 9.29E-6 490 22.87 31.27 30.87 KM Plot
PRAD rs35971873 chr4:185200716 A/AT 0.00011 481 28.67 31.3 30.2 KM Plot
PRAD rs35972244 chr22:18434038 C/G 8.76E-9 485 29.4 32.83 25.02 KM Plot
PRAD rs35979165 chr8:143445391 G/T 0.000126 485 30.33 30.8 31.87 KM Plot
PRAD rs35991105 chr8:54165338 C/T 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs35997661 chr10:99420004 C/T 5.36E-9 484 31.37 29.28 24.67 KM Plot
PRAD rs36012012 chr20:2059022 G/A 3.6E-7 490 28.8 33.6 29.55 KM Plot
PRAD rs36032173 chr2:178786335 A/AT 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs36035424 chr1:68283259 A/AC 7.81E-5 491 30.93 29.23 36.87 KM Plot
PRAD rs36048660 chr5:138382021 G/GA 0.00017 479 33.07 29.98 28.73 KM Plot
PRAD rs36058776 chr2:178796874 T/G 4.13E-5 494 30.77 31.93 20.48 KM Plot